PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012013-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 379aa    MW: 42726.8 Da    PI: 4.751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012013-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12215258654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  ++eY+k+L
  WALNUT_00012013-RA 215 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIEYMKEL 258
                         589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.389209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15213275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-12215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9215258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.87E-5216262No hitNo description
Gene3DG3DSA:4.10.280.102.3E-15216273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.09E-4305346No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MIKYKPIVLC SYIFFPLVQH HIIKVLTLPR EAPTRTNTQT QRARDRRDME LNEHGFLEEL  60
LALRVDTSGT IPTPMNEFVS NGWTFDYFEQ NPAMVFPNSC CEGFSPQLEQ IVDTSSYTLN  120
EVYCPFGNAF SASQLTDSSL NTLDTPPFPM QEDYPFSMME EELGILGDEI HNLEVQASCK  180
AEPIQSPEVP VINIGNCQEV KNPAKKLQGQ PSKNLMAERR RRKRLNDRLS MLRSIVPKIS  240
KMDRTSILGD TIEYMKELLE KINSLQLEID QGSSNITGIF KNVKPNEVLV RNSPKFDVER  300
GNVDTRIEIC CAGKPGLLLS TVNTLEALGL EIQQCVISCF NDFAMQASCS EDMDQGTLLS  360
SEDIKQTLFR NAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217224ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018333.11e-170Beta HLH protein 93
SwissprotQ9LSL12e-80BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A061FF701e-170A0A061FF70_THECC; Beta HLH protein 93
STRINGVIT_18s0001g08040.t011e-161(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-81beta HLH protein 93